2019
18. Weese, D.A. and T.F. Duda Jr. (2019) Effects of predator-prey interactions on predator traits:
  Differentiation of diets and venoms of a marine snail. Toxins 11(5):299.
2018
17. Hoffman, S.K., K.W. Seitz*, J.C. Havird, D.A. Weese, S.R. Santos (2018) Comparing the
  community structure of Bacteria and micro-Eukarya from the Hawaiian anchialine ecosystem. Aquatic
  Microbial Ecology. 82: 87-104.
16. Hoffman, S.K., K.W. Seitz*, J.C. Havird, D.A. Weese, S.R. Santos (2018) Diversity and the environmental drivers of spatial variation in Bacteria and micro-Eukarya communities from the Hawaiian anchialine ecosystem. Hydrobiologia. 806:265-282.
2017
15. Kocot, K.M., T.H. Struck, J. Merkel, D.S. Waits, C. Todt, P.M. Brannock, D.A. Weese, J.T. Cannon, L.L.
  Moroz, B. Lieb, K.M. Halanych (2017) Phylogenomics of Lophotrochozoa with consideration of
  systematic error.  Systematic Biology. 66(2): 256-282.
 2016
14. Weese, D.A., Y Fujita, S.R. Santos (2016) Looking for a needles in the haystack: Molecular  
  identification of anchialine larvae from the Shiokawa Spring, Okinawa, Japan. Journal of Crustacean
  Biology. 31(1): 61-67.
13. Justice, J.L.*, D.A. Weese, S.R. Santos (2016) Phylogenetic utility, and variability in structure and
  content, of complete mitochondrial genomes among genetic lineages of the Hawaiian shrimp
  Halocaridina rubra Holthuis 1963 (Atyidae:Decapoda). Mitochondrial DNA. 27(4): 2710-2718.
2015
12. Havird, J.C., R.C. Vaught*, D.A. Weese, S.R. Santos (2015) Reproduction and development in
  Halocaridina rubra (Crustacea: Atyidae) illuminates larval ecology in the Hawaiian anchialine
  ecosystem.  Biological Bulletin. 229: 134-142.
11. Havird, J.C., K.M. Kocot, P.M. Brannock, J.T. Cannon, D.S. Waits, D.A. Weese, S.R.
  Santos, K.M. Halanych. (2015) Reconstruciton of cyclooxygenase evolution in animals
  suggest variable, lineage-specific prostaglandin synthesis pathways.  Journal of Molecular
  Evolution. 80:193-208.
 
10. Weese, D.A. and T.F. Duda Jr. (2015) Transcriptomic resources for three geographic
  populaitons of Conus miliaris. Molecular Ecology Resources. 15(1):228-229.
 2014
9. Cannon, J.T., K.M. Kocot, D.S. Waits, D.A. Weese, B.J. Swalla, S.R. Santos, K. Halanych
  (2014) Phylogenomic resolution of the Hemichordate and Echinoderm Clade.  Current
  Biology. 24(23):2828-2832.
 
8. Lijun, HE., A. Zhang, S. Li, D.A. Weese, J. Li, J. Zhang (2014)  Dynamic response of
  hairtails (Trichiurus spp.) to glacial cycles in the  China seas:  genetic signatures of
  palaeo-hydrological and primary produciton history. Scientific Reports. 4:srep06380.

2013

7. Weese, D.A., Y. Fujita, S.R. Santos (2013) Multiple colonizations lead to cryptice
  biodiversity in an isalnd ecosystem: Comparative phylogeography of anchialine shrimp
  species in the Ryukyu Archipelago, Japan.  Biological Bulletin. 225(1):225-241. (Editor's 
  Pick Sept. 2013; featured cover article)
 2012
6. Weese, D.A., Y. Fujita, M. Hidaka, S.R. Santos (2012)  The long and short of it: Genetic
  variation and population structure of the anchialine atyid shrimp Caridina rubella on
  Miyako-jima, Japan. Journal of Crustacean Biology. 32(1):109-117.

2011

5. Santos, S.R., D.A. Weese (2011)  Rocks and Clocks: Linking geologic history and rates
  of genetic differentiation in anchialine organisms. Hydrobiologia. 677(1):53-64. (invited
  contribution)
4. He, L., A. Zhang, C. Zhu, D.A. Weese, Z. Qiao (2011)  Phylogeography of the mud crab
  (Scylla serrata) in the Indo-West Pacific reappraised from mitochondrial molecular and
  oceanographic clues: Transoceanic dispersal and coastal sequential colonization.
  Marine Ecology. 32:52-64.
2010
3. He, L., A. Zhang, D.A. Weese, Z. Chaodong, J. Chaojun, Z. Qiao (2010)  Late
  Pleistocene population expansion of Scylla paramamosain along the coast of China: a
  population dynamic response to the Last Interglacial sea level highstand. Journal of
  Experimental Marine Biology and Ecology. 385:20-28.

2009 ​​

2. Weese, D.A., S.R. Santos (2009)  Genetic identification of source populations for an
  aquarium-traded invertebrate. Animal Conservation. 12:13-19. (featured cover article)
 
1.  Weese, D.A., D.K. Mclain, A.E. Pratt, Q.Q. Fang (2009)  Molecular population genetics of
  the Atlantic Sand Fiddler Crab, Uca pugilator, along the Atlantic coast. Current Zoology.
  55:151-158. (featured cover article)